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A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks

机译:一种新的计算有效的拓扑冗余度量   生物和社会网络

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摘要

It is well-known that biological and social interaction networks have avarying degree of redundancy, though a consensus of the precise cause of thisis so far lacking. In this paper, we introduce a topological redundancy measurefor labeled directed networks that is formal, computationally efficient andapplicable to a variety of directed networks such as cellular signaling,metabolic and social interaction networks. We demonstrate the computationalefficiency of our measure by computing its value and statistical significanceon a number of biological and social networks with up to several thousands ofnodes and edges. Our results suggest a number of interesting observations: (1)social networks are more redundant that their biological counterparts, (2)transcriptional networks are less redundant than signaling networks, (3) thetopological redundancy of the C. elegans metabolic network is largely due toits inclusion of currency metabolites, and (4) the redundancy of signalingnetworks is highly (negatively) correlated with the monotonicity of theirdynamics.
机译:众所周知,生物和社会互动网络具有各种程度的冗余度,尽管到目前为止,尚缺乏确切原因的共识。在本文中,我们为标记的有向网络引入了一种拓扑冗余度量,该措施是形式化的,计算效率高的,适用于各种有向网络,例如蜂窝信号,代谢和社交网络。通过在具有多达数千个节点和边缘的许多生物和社会网络上计算其价值和统计意义,我们证明了该度量的计算效率。我们的结果提出了许多有趣的观察结果:(1)社会网络比其生物学副本更具冗余性;(2)转录网络比信号网络的冗余度小;(3)秀丽隐杆线虫代谢网络的拓扑冗余在很大程度上是由于其(4)信号网络的冗余度与其动力学的单调性高度相关(负相关)。

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